Software

The Center faculty and their groups often make software available. Below are links organized by application and task .

Software by Application

Location Proteomics

PSLID: Protein Subcellular Location Image Database
Available at: http://murphylab.web.cmu.edu/services/PSLID/

SLIF: Subcellular Location Image Finder
Available at: http://murphylab.web.cmu.edu/services/SLIF/

Adaptive multirate acquisition of fluorescence microscopy data sets
Available at: http://andrew.cmu.edu/user/jelenak/Software/index.html

Intelligent acquisition and learning of fluorescence microscope data models
Available at: http://andrew.cmu.edu/user/jelenak/Software/index.html

Topology preserving STACS segmentation
Available at: http://andrew.cmu.edu/user/jelenak/Software/index.html

Multiresolution frame classification
Available at: http://andrew.cmu.edu/user/jelenak/Software/index.html

A Graphical Model Approach to Automated Classification of Protein Subcellular Location Patterns in Multi-Cell Images
Available at: http://murphylab.web.cmu.edu/software/2006_BMC_bioinformatics/

Approximate Inference Approach To Automated Classification Of Protein Subcellular Location Patterns In Multi-Cell Images
Available at: http://murphylab.web.cmu.edu/software/2006_ISBI_PU/

Automated learning of generative models for subcellular location: Building blocks for systems biology
Available at: http://murphylab.web.cmu.edu/software/2007_Cytometry_GenModel/

Image Analysis for High-Throughput Drosophila Embryo RNAi Screens

Multiresolution frame classification
Available at: http://andrew.cmu.edu/user/jelenak/Software/index.html

Golgi-Body Segmentation

Active mask segmentation
Available at: http://andrew.cmu.edu/user/jelenak/Software/index.html

Identification of Germ Layer Components in Teratomas Derived from Embryonic Stem Cells

Multiresolution frame classification
Available at: http://andrew.cmu.edu/user/jelenak/Software/index.html

Software by Task

Database Services

PSLID: Protein Subcellular Location Image Database
Available at: http://murphylab.web.cmu.edu/services/PSLID/

SLIF: Subcellular Location Image Finder
Available at: http://murphylab.web.cmu.edu/services/SLIF/

Acquisition

Adaptive multirate acquisition of fluorescence microscopy data sets
Available at: http://andrew.cmu.edu/user/jelenak/Software/index.html

Intelligent acquisition and learning of fluorescence microscope data models
Available at: http://andrew.cmu.edu/user/jelenak/Software/index.html

Segmentation

Topology preserving STACS segmentation
Available at: http://andrew.cmu.edu/user/jelenak/Software/index.html

Active mask segmentation
Available at: http://andrew.cmu.edu/user/jelenak/Software/index.html

Classification/Recognition

Multiresolution frame classification
Available at: http://andrew.cmu.edu/user/jelenak/Software/index.html

A Graphical Model Approach to Automated Classification of Protein Subcellular Location Patterns in Multi-Cell Images
Available at: http://murphylab.web.cmu.edu/software/2006_BMC_bioinformatics/

Approximate Inference Approach To Automated Classification Of Protein Subcellular Location Patterns In Multi-Cell Images
Available at: http://murphylab.web.cmu.edu/software/2006_ISBI_PU/

Model Learning

Automated learning of generative models for subcellular location: Building blocks for systems biology
Available at: http://murphylab.web.cmu.edu/software/2007_Cytometry_GenModel/