Software
The Center faculty and their groups often make software available. Below are links organized by application and task .
Location Proteomics
PSLID: Protein Subcellular Location Image Database
Available at: http://murphylab.web.cmu.edu/services/PSLID/
SLIF: Subcellular Location Image Finder
Available at: http://murphylab.web.cmu.edu/services/SLIF/
Adaptive multirate acquisition of fluorescence microscopy data sets
Available at: http://andrew.cmu.edu/user/jelenak/Software/index.html
Intelligent acquisition and learning of fluorescence microscope data models
Available at: http://andrew.cmu.edu/user/jelenak/Software/index.html
Topology preserving STACS segmentation
Available at: http://andrew.cmu.edu/user/jelenak/Software/index.html
Multiresolution frame classification
Available at: http://andrew.cmu.edu/user/jelenak/Software/index.html
A Graphical Model Approach to Automated Classification of Protein Subcellular Location Patterns in Multi-Cell Images
Available at: http://murphylab.web.cmu.edu/software/2006_BMC_bioinformatics/
Approximate Inference Approach To Automated Classification Of Protein Subcellular Location Patterns In Multi-Cell Images
Available at: http://murphylab.web.cmu.edu/software/2006_ISBI_PU/
Automated learning of generative models for subcellular location: Building blocks for systems biology
Available at: http://murphylab.web.cmu.edu/software/2007_Cytometry_GenModel/
Image Analysis for High-Throughput Drosophila Embryo RNAi Screens
Multiresolution frame classification
Available at: http://andrew.cmu.edu/user/jelenak/Software/index.html
Golgi-Body Segmentation
Active mask segmentation
Available at: http://andrew.cmu.edu/user/jelenak/Software/index.html
Identification of Germ Layer Components in Teratomas Derived from Embryonic Stem Cells
Multiresolution frame classification
Available at: http://andrew.cmu.edu/user/jelenak/Software/index.html
|